Skip to contents

Main functions

uniprot_map()
Map from/to UniProt IDs
uniprot_search()
Search UniProt
uniprot_single()
Download a single UniProt entry

Datasets

Contains info about databases and data available to request.

return_fields
(Dataset) UniProt return fields
from_to_dbs
(Dataset) From/to databases for ID mapping
from_to_rules
(Dataset) From/to rules for ID mapping
formats
(Dataset) UniProt download formats

Construct and perform httr2 requests

These functions you likely won’t use directly.

uniprot_request()
Create a UniProt HTTP request
fetch_paged()
Fetch results via pagination
fetch_stream()
Fetch results via stream

Parse httr2 responses

These functions you likely won’t use directly.

resp_body_tsv()
Extract tab-delimited data from response body
resp_body_fasta()
Extract FASTA data from response body