Function reference • uniprotREST

Main functions

uniprot_map(): Map from/to UniProt IDs

uniprot_search(): Search UniProt

uniprot_single(): Download a single UniProt entry

Datasets

Contains info about databases and data available to request.

return_fields: (Dataset) UniProt return fields

from_to_dbs: (Dataset) From/to databases for ID mapping

from_to_rules: (Dataset) From/to rules for ID mapping

formats: (Dataset) UniProt download formats

Construct and perform httr2 requests

These functions you likely won’t use directly.

uniprot_request(): Create a UniProt HTTP request

fetch_paged(): Fetch results via pagination

fetch_stream(): Fetch results via stream

Parse httr2 responses

These functions you likely won’t use directly.

resp_body_tsv(): Extract tab-delimited data from response body

resp_body_fasta(): Extract FASTA data from response body