This list contains the valid from/to pairings that can be used
with uniprot_map(). See Examples below for how to use this object.
Also see from_to_dbs for the more information on each database.
Source
From/to pairs have been downloaded according to the "Valid from and to databases pairs" section on the UniProt ID Mapping page.
Examples
# Show valid `from` values
names(from_to_rules)
#> [1] "Allergome" "ArachnoServer"
#> [3] "Araport" "BioCyc"
#> [5] "BioGRID" "BioMuta"
#> [7] "CCDS" "CGD"
#> [9] "ChEMBL" "ChiTaRS"
#> [11] "CLAE" "CollecTF"
#> [13] "ComplexPortal" "ConoServer"
#> [15] "CPTAC" "CRC64"
#> [17] "dictyBase" "DIP"
#> [19] "DisProt" "DMDM"
#> [21] "DNASU" "DrugBank"
#> [23] "EchoBASE" "eggNOG"
#> [25] "EMBL-GenBank-DDBJ" "EMBL-GenBank-DDBJ_CDS"
#> [27] "Ensembl" "Ensembl_Genomes"
#> [29] "Ensembl_Genomes_Protein" "Ensembl_Genomes_Transcript"
#> [31] "Ensembl_Protein" "Ensembl_Transcript"
#> [33] "ESTHER" "euHCVdb"
#> [35] "FlyBase" "Gene_Name"
#> [37] "GeneCards" "GeneID"
#> [39] "GeneReviews" "GeneTree"
#> [41] "GeneWiki" "GenomeRNAi"
#> [43] "GI_number" "GlyConnect"
#> [45] "GuidetoPHARMACOLOGY" "HGNC"
#> [47] "HOGENOM" "IDEAL"
#> [49] "KEGG" "LegioList"
#> [51] "Leproma" "MaizeGDB"
#> [53] "MEROPS" "MGI"
#> [55] "MIM" "neXtProt"
#> [57] "OMA" "OpenTargets"
#> [59] "Orphanet" "OrthoDB"
#> [61] "PATRIC" "PDB"
#> [63] "PeroxiBase" "PharmGKB"
#> [65] "PHI-base" "PIR"
#> [67] "PlantReactome" "PomBase"
#> [69] "ProteomicsDB" "PseudoCAP"
#> [71] "Reactome" "REBASE"
#> [73] "RefSeq_Nucleotide" "RefSeq_Protein"
#> [75] "RGD" "SGD"
#> [77] "STRING" "SwissLipids"
#> [79] "TCDB" "TreeFam"
#> [81] "TubercuList" "UCSC"
#> [83] "UniParc" "UniPathway"
#> [85] "UniProtKB_AC-ID" "UniRef100"
#> [87] "UniRef50" "UniRef90"
#> [89] "VEuPathDB" "VGNC"
#> [91] "WBParaSite" "WBParaSite_Transcript-Protein"
#> [93] "World-2DPAGE" "WormBase"
#> [95] "WormBase_Protein" "WormBase_Transcript"
#> [97] "Xenbase" "ZFIN"
# Show valid `to` values for a given `from` e.g. SGD
from_to_rules[["SGD"]]
#> [1] "UniProtKB" "UniProtKB-Swiss-Prot"