This vignette describes the databases available to
uniprot_map(), and which databases are allowed to map
from or to.
| from | to |
|---|---|
| UniProtKB_AC-ID https://www.uniprot.org/uniprot/%id |
CCDS PIR PDB BioGRID ComplexPortal DIP STRING ChEMBL DrugBank GuidetoPHARMACOLOGY SwissLipids Allergome ESTHER MEROPS CLAE PeroxiBase REBASE TCDB GlyConnect BioMuta DMDM World-2DPAGE CPTAC ProteomicsDB DNASU Ensembl GeneID KEGG PATRIC UCSC WBParaSite WBParaSite_Transcript-Protein ArachnoServer Araport CGD ConoServer dictyBase EchoBASE euHCVdb VEuPathDB FlyBase GeneCards GeneReviews HGNC LegioList Leproma MaizeGDB MGI MIM neXtProt OpenTargets Orphanet PharmGKB PomBase PseudoCAP RGD SGD TubercuList VGNC WormBase Xenbase ZFIN eggNOG GeneTree HOGENOM OMA OrthoDB TreeFam BioCyc Reactome UniPathway PlantReactome ChiTaRS GeneWiki GenomeRNAi PHI-base CollecTF IDEAL DisProt UniProtKB UniProtKB-Swiss-Prot UniParc UniRef50 UniRef90 UniRef100 Gene_Name CRC64 EMBL-GenBank-DDBJ EMBL-GenBank-DDBJ_CDS GI_number RefSeq_Nucleotide RefSeq_Protein Ensembl_Protein Ensembl_Transcript Ensembl_Genomes Ensembl_Genomes_Protein Ensembl_Genomes_Transcript WormBase_Protein WormBase_Transcript |
| UniRef100 https://www.uniprot.org/uniref/%id |
UniProtKB UniProtKB-Swiss-Prot UniRef100 |
| UniRef50 https://www.uniprot.org/uniref/%id |
UniProtKB UniProtKB-Swiss-Prot UniRef50 |
| UniRef90 https://www.uniprot.org/uniref/%id |
UniProtKB UniProtKB-Swiss-Prot UniRef90 |
| UniParc |
UniProtKB UniProtKB-Swiss-Prot UniParc |
| Allergome http://www.allergome.org/script/dettaglio.php?id_molecule=%id |
UniProtKB UniProtKB-Swiss-Prot |
| ArachnoServer http://www.arachnoserver.org/toxincard.html?id=%id |
UniProtKB UniProtKB-Swiss-Prot |
| Araport https://apps.araport.org/thalemine/portal.do?externalids=%id |
UniProtKB UniProtKB-Swiss-Prot |
| BioCyc https://biocyc.org/getid?id=%id |
UniProtKB UniProtKB-Swiss-Prot |
| BioGRID https://thebiogrid.org/%id |
UniProtKB UniProtKB-Swiss-Prot |
| BioMuta https://hive.biochemistry.gwu.edu/tools/biomuta/biomuta.php?gene=%id |
UniProtKB UniProtKB-Swiss-Prot |
| CCDS https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=%id |
UniProtKB UniProtKB-Swiss-Prot |
| CGD http://www.candidagenome.org/cgi-bin/locus.pl?dbid=%id |
UniProtKB UniProtKB-Swiss-Prot |
| ChEMBL https://www.ebi.ac.uk/chembldb/target/inspect/%id |
UniProtKB UniProtKB-Swiss-Prot |
| ChiTaRS http://chitars.md.biu.ac.il/bin/search.pl?searchtype=gene_name&searchstr=%id&%d=1 |
UniProtKB UniProtKB-Swiss-Prot |
| CLAE https://mycoclap.fungalgenomics.ca/mycoCLAP/clap/GeneView/%id |
UniProtKB UniProtKB-Swiss-Prot |
| CollecTF http://www.collectf.org/%id |
UniProtKB UniProtKB-Swiss-Prot |
| ComplexPortal https://www.ebi.ac.uk/complexportal/complex/%id |
UniProtKB UniProtKB-Swiss-Prot |
| ConoServer http://www.conoserver.org/?page=card&table=protein&id=%id |
UniProtKB UniProtKB-Swiss-Prot |
| CPTAC https://assays.cancer.gov/%id |
UniProtKB UniProtKB-Swiss-Prot |
| CRC64 |
UniProtKB UniProtKB-Swiss-Prot |
| dictyBase http://dictybase.org/db/cgi-bin/gene_page.pl?primary_id=%id |
UniProtKB UniProtKB-Swiss-Prot |
| DIP https://dip.doe-mbi.ucla.edu/dip/Browse.cgi?ID=%id |
UniProtKB UniProtKB-Swiss-Prot |
| DisProt https://disprot.org/%id |
UniProtKB UniProtKB-Swiss-Prot |
| DMDM http://bioinf.umbc.edu/dmdm/gene_prot_page.php?search_type=protein&id=%id |
UniProtKB UniProtKB-Swiss-Prot |
| DNASU https://dnasu.org/DNASU/AdvancedSearchOptions.do?geneName=%id |
UniProtKB UniProtKB-Swiss-Prot |
| DrugBank https://www.drugbank.ca/drugs/%id |
UniProtKB UniProtKB-Swiss-Prot |
| EchoBASE http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=%id |
UniProtKB UniProtKB-Swiss-Prot |
| eggNOG http://eggnogdb.embl.de/#/app/results?seqid=%primaryAccession&target_nogs=%id |
UniProtKB UniProtKB-Swiss-Prot |
| EMBL-GenBank-DDBJ https://www.ebi.ac.uk/ena/data/view/%id |
UniProtKB UniProtKB-Swiss-Prot |
| EMBL-GenBank-DDBJ_CDS https://www.ebi.ac.uk/ena/data/view/%id |
UniProtKB UniProtKB-Swiss-Prot |
| Ensembl https://www.ensembl.org/id/%id |
UniProtKB UniProtKB-Swiss-Prot |
| Ensembl_Genomes http://www.ensemblgenomes.org/id/%id |
UniProtKB UniProtKB-Swiss-Prot |
| Ensembl_Genomes_Protein http://www.ensemblgenomes.org/id/%id |
UniProtKB UniProtKB-Swiss-Prot |
| Ensembl_Genomes_Transcript http://www.ensemblgenomes.org/id/%id |
UniProtKB UniProtKB-Swiss-Prot |
| Ensembl_Protein https://www.ensembl.org/id/%id |
UniProtKB UniProtKB-Swiss-Prot |
| Ensembl_Transcript https://www.ensembl.org/id/%id |
UniProtKB UniProtKB-Swiss-Prot |
| ESTHER http://bioweb.supagro.inra.fr/ESTHER/gene_locus?name=%id&class=Gene_locus |
UniProtKB UniProtKB-Swiss-Prot |
| euHCVdb https://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC=%id |
UniProtKB UniProtKB-Swiss-Prot |
| FlyBase http://flybase.org/reports/%id.html |
UniProtKB UniProtKB-Swiss-Prot |
| Gene_Name https://proteininformationresource.org/cgi-bin/nbrfget?uid=%id |
UniProtKB UniProtKB-Swiss-Prot |
| GeneCards https://www.genecards.org/cgi-bin/carddisp.pl?gene=%id |
UniProtKB UniProtKB-Swiss-Prot |
| GeneID https://www.ncbi.nlm.nih.gov/gene/%id |
UniProtKB UniProtKB-Swiss-Prot |
| GeneReviews https://www.ncbi.nlm.nih.gov/books/NBK1116/?term=%id |
UniProtKB UniProtKB-Swiss-Prot |
| GeneTree http://www.ensemblgenomes.org/id-genetree/%id |
UniProtKB UniProtKB-Swiss-Prot |
| GeneWiki https://en.wikipedia.org/wiki/%id |
UniProtKB UniProtKB-Swiss-Prot |
| GenomeRNAi http://genomernai.org/genedetails/%id |
UniProtKB UniProtKB-Swiss-Prot |
| GI_number |
UniProtKB UniProtKB-Swiss-Prot |
| GlyConnect https://glyconnect.expasy.org/browser/proteins/%id |
UniProtKB UniProtKB-Swiss-Prot |
| GuidetoPHARMACOLOGY http://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId=%id |
UniProtKB UniProtKB-Swiss-Prot |
| HGNC https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/%id |
UniProtKB UniProtKB-Swiss-Prot |
| HOGENOM http://hogenom.univ-lyon1.fr/query_sequence?seq=%primaryAccession |
UniProtKB UniProtKB-Swiss-Prot |
| IDEAL http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/ideal.php?id=%id |
UniProtKB UniProtKB-Swiss-Prot |
| KEGG https://www.genome.jp/dbget-bin/www_bget?%id |
UniProtKB UniProtKB-Swiss-Prot |
| LegioList http://genolist.pasteur.fr/LegioList/genome.cgi?external_query+%id |
UniProtKB UniProtKB-Swiss-Prot |
| Leproma https://mycobrowser.epfl.ch/genes/%id |
UniProtKB UniProtKB-Swiss-Prot |
| MaizeGDB https://www.maizegdb.org/data_center/gene_product?id=%id |
UniProtKB UniProtKB-Swiss-Prot |
| MEROPS https://www.ebi.ac.uk/merops/cgi-bin/pepsum?mid=%id |
UniProtKB UniProtKB-Swiss-Prot |
| MGI http://www.informatics.jax.org/marker/%id |
UniProtKB UniProtKB-Swiss-Prot |
| MIM https://www.omim.org/entry/%id |
UniProtKB UniProtKB-Swiss-Prot |
| neXtProt https://www.nextprot.org/entry/%id |
UniProtKB UniProtKB-Swiss-Prot |
| OMA https://omabrowser.org/oma/group/%primaryAccession |
UniProtKB UniProtKB-Swiss-Prot |
| OpenTargets https://www.targetvalidation.org/target/%id/associations |
UniProtKB UniProtKB-Swiss-Prot |
| Orphanet https://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=GB&Expert=%id |
UniProtKB UniProtKB-Swiss-Prot |
| OrthoDB https://www.orthodb.org/?gene=%primaryAccession |
UniProtKB UniProtKB-Swiss-Prot |
| PATRIC https://www.patricbrc.org/view/Feature/%id |
UniProtKB UniProtKB-Swiss-Prot |
| PDB https://www.ebi.ac.uk/pdbe-srv/view/entry/%id |
UniProtKB UniProtKB-Swiss-Prot |
| PeroxiBase http://peroxibase.toulouse.inra.fr/display_perox/view_perox/%id |
UniProtKB UniProtKB-Swiss-Prot |
| PharmGKB https://www.pharmgkb.org/gene/%id |
UniProtKB UniProtKB-Swiss-Prot |
| PHI-base http://www.phi-base.org/searchFacet.htm?queryTerm=%id |
UniProtKB UniProtKB-Swiss-Prot |
| PIR https://proteininformationresource.org/cgi-bin/nbrfget?uid=%id |
UniProtKB UniProtKB-Swiss-Prot |
| PlantReactome https://plantreactome.gramene.org/PathwayBrowser/#/%id&FLG=%primaryAccession |
UniProtKB UniProtKB-Swiss-Prot |
| PomBase https://www.pombase.org/spombe/result/%id |
UniProtKB UniProtKB-Swiss-Prot |
| ProteomicsDB https://www.proteomicsdb.org/proteomicsdb/#protein/proteinDetails/%id |
UniProtKB UniProtKB-Swiss-Prot |
| PseudoCAP http://www.pseudomonas.com/feature/show?locus_tag=%id |
UniProtKB UniProtKB-Swiss-Prot |
| Reactome https://www.reactome.org/PathwayBrowser/#%id&FLG=%primaryAccession |
UniProtKB UniProtKB-Swiss-Prot |
| REBASE http://rebase.neb.com/rebase/enz/%id.html |
UniProtKB UniProtKB-Swiss-Prot |
| RefSeq_Nucleotide https://www.ncbi.nlm.nih.gov/nuccore/%id |
UniProtKB UniProtKB-Swiss-Prot |
| RefSeq_Protein https://www.ncbi.nlm.nih.gov/protein/%id |
UniProtKB UniProtKB-Swiss-Prot |
| RGD http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=%id |
UniProtKB UniProtKB-Swiss-Prot |
| SGD https://www.yeastgenome.org/locus/%id |
UniProtKB UniProtKB-Swiss-Prot |
| STRING https://string-db.org/network/%id |
UniProtKB UniProtKB-Swiss-Prot |
| SwissLipids https://www.swisslipids.org/#/entity/%id/ |
UniProtKB UniProtKB-Swiss-Prot |
| TCDB http://www.tcdb.org/search/result.php?tc=%id |
UniProtKB UniProtKB-Swiss-Prot |
| TreeFam http://www.treefam.org/family/%id |
UniProtKB UniProtKB-Swiss-Prot |
| TubercuList https://mycobrowser.epfl.ch/genes/%id |
UniProtKB UniProtKB-Swiss-Prot |
| UCSC https://genome.ucsc.edu/cgi-bin/hgLinkIn?resource=uniprot&id=%primaryAccession |
UniProtKB UniProtKB-Swiss-Prot |
| UniPathway |
UniProtKB UniProtKB-Swiss-Prot |
| VEuPathDB https://www.veupathdb.org/gene/%id |
UniProtKB UniProtKB-Swiss-Prot |
| VGNC https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/%id |
UniProtKB UniProtKB-Swiss-Prot |
| WBParaSite https://parasite.wormbase.org/id/%id |
UniProtKB UniProtKB-Swiss-Prot |
| WBParaSite_Transcript-Protein https://parasite.wormbase.org/id/%id |
UniProtKB UniProtKB-Swiss-Prot |
| World-2DPAGE https://world-2dpage.expasy.org/repository/%id |
UniProtKB UniProtKB-Swiss-Prot |
| WormBase https://wormbase.org/species/c_elegans/cds/%id |
UniProtKB UniProtKB-Swiss-Prot |
| WormBase_Protein https://parasite.wormbase.org/id/%id |
UniProtKB UniProtKB-Swiss-Prot |
| WormBase_Transcript https://parasite.wormbase.org/id/%id |
UniProtKB UniProtKB-Swiss-Prot |
| Xenbase http://www.xenbase.org/gene/showgene.do?method=display&geneId=%id |
UniProtKB UniProtKB-Swiss-Prot |
| ZFIN https://zfin.org/%id |
UniProtKB UniProtKB-Swiss-Prot |