Available Formats

This vignette describes all the currently available file formats to download using the main uniprotREST functions. There are more file formats available via their website which have not yet been implemented.

map

database	format
uniprotkb	fasta, tsv
uniref	fasta, tsv
uniparc	fasta, tsv
other	tsv

search

database	format
uniprotkb	fasta, tsv
uniref	fasta, tsv
uniparc	fasta, tsv
proteomes	tsv
taxonomy	tsv
keywords	tsv
citations	tsv
diseases	tsv
locations	tsv

single

database	format
uniprotkb	fasta, json, tsv
uniref	fasta, json, tsv
uniparc	fasta, json, tsv
proteomes	json, tsv
taxonomy	json, tsv
keywords	json, tsv
citations	json, tsv
diseases	json, tsv
database	json
locations	json, tsv
unirule	json
arba	json